PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G21160.1
Common NameLOC102722967
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 368aa    MW: 41895.5 Da    PI: 7.9605
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G21160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-07427226
                  -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                  k++lC+ff+  G C  G+ C F+H+
  OB06G21160.1  4 KRVLCKFFMH-GACLKGEYCEFSHD 27
                  99****8888.*************5 PP

2zf-CCCH28.42.8e-093555526
                  --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   C f+++ G C+yG+rC++ H+
  OB06G21160.1 35 VCTFYQK-GACSYGSRCRYDHV 55
                  5******.*************7 PP

3zf-CCCH23.87.6e-08151172426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   ++C+ fa+ G C+yG+ C+ +Hg
  OB06G21160.1 151 PICS-FAAAGNCPYGEECPQMHG 172
                   6788.*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156631.0E-7161No hitNo description
SMARTSM003561.8E-5228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-7427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5583057IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-43156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-53154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-43554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.333147174IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4148173IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-5151172IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.98E-12206280No hitNo description
Gene3DG3DSA:3.30.40.104.7E-10209275IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001629.63E-4215275No hitNo description
PROSITE profilePS5008912.297216274IPR001841Zinc finger, RING-type
PfamPF000972.1E-7216273IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001842.7E-7216273IPR001841Zinc finger, RING-type
PROSITE patternPS005180240249IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.0047303331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089303332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4305333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSSKRVLCKF FMHGACLKGE YCEFSHDWND QPNNVCTFYQ KGACSYGSRC RYDHVKVSRN  60
PTVPPPQSSS TTTRASSSVQ PLSFARPHHV GYQVDSSNPR QQMSMDVLAH SGSKPIWRND  120
FQHESILEDG IDWSSNRIVQ NQTTLSAADL PICSFAAAGN CPYGEECPQM HGDLCTTCGK  180
MCLHPYRPDE REEHIKLCEK NHKRLDSLKR SQEIECSVCL DRVLSKPTAA ERKFGLLSEC  240
DHPFCISCIR NWRNNSPTSG MDVNSALRAC PICRKLSYYV IPSVLWYFSK EEKLEIIENY  300
KVKLKSIDCK YFDFGTGTCP FGSSCFYKHA YRDGRLEEVV LRHLDADDGS TVISKNIRLS  360
DFLSRLRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210DSLKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1202500.0AK120250.1 Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656013.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLJ3MDM20.0J3MDM2_ORYBR; Uncharacterized protein
STRINGOB06G21160.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-150C3H family protein